GCAATCC
Repeat=8, 11.94%
-32.468, GO:0043245|extraorganismal space
-23.942, GO:0020033|antigenic variation
-23.942, GO:0042782|passive immune evasion
-23.807, GO:0006952|defense response
| Size | 7 |
|---|---|
| Pattern | GCAATCC |
| Pattern_RC | GGATTGC |
| LogP | -12.9855018037723 |
| Similarity | 0.541912988322467 |
| Hits in Cluster | 67 |
| Hits in Genome | 341 |
| PSSM | GCAATCC Repeat=8, 11.94% |
| Instances | GCAATCC GCAAACC GGATTAC GCAATAC GGTTTAC GAATTGC GCAAAAC GCAACCC |
| In Cluster Annotation | -32.468, GO:0018995|host -32.468, GO:0043245|extraorganismal space -23.942, GO:0020033|antigenic variation -23.942, GO:0042782|passive immune evasion -23.807, GO:0006952|defense response |
 |
| Species | LogP | InCluster | InGenome | InClusterSite | InGenomeSite | Similarity |
|---|---|---|---|---|---|---|
| Py | -0.68 | 13 | 185 | 13 | 203 | 0.62 |
| Pc | -1.58 | 21 | 277 | 29 | 343 | 0.57 |
Code: Y=CT W=AT S=CG M=AC K=GT R=AG H=ACT B=CGT V=ACG D=AGT N=ACGT Consensus NNWNAATWNTWNWNAWNNNTGCAAAMCNWANNTWTWNNAWANWNDNW MAL13P1.333 + -836 ttttttgtgcattcttatttGTAATCCaaatagtatatatgtaaaat -790 [-813.0] hypothetical protein MAL13P1.63 + -64 gttcaataagaataatcgaaGCAATACtaatagcgaattatataacc -18 [-41.0] Plasmodium falciparum asparagine-rich protein MAL13P1.75 + -435 ctattgaacattattattttGTAAACCttatattctattatcatttt -389 [-412.0] hypothetical protein MAL6P1.10 - -405 taacaatagttgttatgggtGTAAACCatatatatatcataatatcc -451 [-428.0] stevor MAL6P1.2 - -445 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -491 [-468.0] rifin MAL6P1.237 - -822 agaagaaaacgacaaagatcGCAAAACcattgaatcaggtaacaaat -868 [-845.0] hypothetical protein MAL6P1.237 - -775 gatagtatatataaagagatGCAAAACaaagagattaatgagaagaa -821 [-798.0] hypothetical protein MAL6P1.311 - -435 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -481 [-458.0] rifin MAL6P1.313 + -1000 aagtatattattacaactaGTAATCCtacaaatattatatcaagaa -955 [-977.0] rifin MAL6P1.315 - -435 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -481 [-458.0] rifin MAL6P1.36 + -566 tttattcatgtatttattttGTAATCCttcaattgttaattcattca -520 [-543.0] dihydroorotate dehydrogenase, mitochondrial precursor MAL7P1.1 + -268 aaaaaattatacatataatgGCAAACCtttggtatagaaaaaagtat -222 [-245.0] erythrocyte membrane protein 1 (PfEMP1) PF07_0053 - -551 atatataaataaatatttatGCAATTCaataatttatttatataggt -597 [-574.0] hypothetical protein PF07_0067 + -177 tataaaaaaattataataaaGCAAAACatataaaaatatatatatat -131 [-154.0] hypothetical protein PF07_0082 - -47 atttatttataatcacatatGTAATCCtttttgtattcaacagaaaa -93 [-70.0] hypothetical protein PF07_0130 - -448 gatcaatagttgttatgggtGTAAACCacatatatattataataggc -494 [-471.0] stevor PF07_0135 - -300 ttaattaaatttaattttatGCAATACgataaattacaattgaaatg -346 [-323.0] rifin PF08_0106 + -72 cctaccacttcaagaaccatGCAAACCcacaaaattgtatgacatga -26 [-49.0] erythrocyte membrane protein 1 (PfEMP1) PF08_0113 - -258 acaaaatatataatctcataGCAATCCtatttataggcacatttgct -304 [-281.0] vacuolar proton translocating ATPase subunit A PF08_0139 - -439 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -485 [-462.0] rifin PF10_0284 + -915 ggaaagcgatggattcattaGTAAACCttttaaaggccccgccaaaa -869 [-892.0] hypothetical protein PF10_0395 - -373 taacaataattgttatgggtGTAAACCatatatatataataatagct -419 [-396.0] stevor, putative PF10_0401 - -427 gaacaatagttcttatgggtGTAAACCgtatatatataatattaacg -473 [-450.0] rifin PF10_0405 - -435 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -481 [-458.0] rifin PF11_0008 + -154 aaaaaattatacatataatgGCAAACCtttggtatcgaaaaaaatat -108 [-131.0] erythrocyte membrane protein 1 (PfEMP1) PF11_0013 - -418 taaaatagatataatataaaGCAAAACataatattttaatacactat -464 [-441.0] stevor, putative, degenerate PF11_0517 + -856 atacatatcatattcaatttGCAAAACtatgattttacacatttgta -810 [-833.0] rifin PF11_0519 + -1000 ttgttacaactaGTAATCCtacatttattatatcaataa -962 [-977.0] rifin PF13_0002 - -439 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -485 [-462.0] rifin PF13_0003 + -594 aatattcaacaatagtacgaGCAAAACattattatcaatattatgaa -548 [-571.0] erythrocyte membrane protein 1 (PfEMP1) PF13_0088 + -180 aaataagcatagatgattatGTAAACCtttatttcttatcattcatt -134 [-157.0] Myb1 protein PF13_0310 - -891 aaaaaaaaaaagatccgtatGCAATTCttatttttatattgtttttt -937 [-914.0] hypothetical protein PF14_0002 - -841 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -887 [-864.0] rifin PF14_0004 - -416 aaacaatatattatatgggtGCAAACCacatataaataataatagct -462 [-439.0] rifin PF14_0005 - -419 gttcaatagttgttatgcgtGTAAACCacatatatataataatagct -465 [-442.0] rifin PF14_0007 - -381 taacaatagttgttatgggtGTAAACCatatatatatcataatagcc -427 [-404.0] stevor, putative PF14_0094 + -856 atatgaataaaatttaagcaGCAATTCgataaaataaaataaaataa -810 [-833.0] hypothetical protein PF14_0095 + -857 agttgtatataaccatttatGTAAACCtatatgaatataactatgaa -811 [-834.0] hypothetical protein PF14_0274 - -743 gaacataagaatagaagaagGCAATCCttctttttcatctcctaaga -789 [-766.0] hypothetical protein, conserved PF14_0410 - -437 ataatttatatatatgtacaGCAATACatatttatatatataataat -483 [-460.0] hypothetical protein PFA0010c - -436 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -482 [-459.0] rifin PFA0045c - -419 gaacagtagttgttatgggtGTAAACCacacatatatatatataata -465 [-442.0] rifin PFA0080c + -479 atataattcatagagaattcGCAAAACtatagttttacacatttgta -433 [-456.0] rifin PFA0090c - -383 taaaaatagttgttatgggtGTAAACCatatatatatcataatagct -429 [-406.0] stevor PFA0105w + -326 ttatagataaatagatcattGCAATACaactccttaaaatacataac -280 [-303.0] stevor PFA0330w + -306 atatataaatatactgtgacGTAAACCacaatatgattatacgttat -260 [-283.0] pfAARP2 protein PFB0955w + -289 gtaacaaaaatatattattcGTAATCCttattttataatatatatat -243 [-266.0] stevor, degenerate, putative PFB1020w - -398 taacaatagttgttatggggGTAAACCatatatatatcataatagct -444 [-421.0] stevor, putative PFD0020c + -261 aaaaagaaatatatataatgGCAAACCtttggtatagaaaaaaatat -215 [-238.0] erythrocyte membrane protein 1 (PfEMP1) PFD0040c - -429 gaacaatatttgttatgggtGCAAACCgcatatatataataatagct -475 [-452.0] rifin PFD0050w + -1000 gatatattgttacaactaGTAATCCtacatttattatatcaataa -956 [-977.0] rifin PFD0065w - -450 gatcaatagttgtttttggtGTAAACCacatatataacataatagcc -496 [-473.0] STEVOR pseudogene PFD0260c - -351 tctttcctatgtagatatatGCAACCCactctacaagacactcgaaa -397 [-374.0] sequestrin PFD1045c + -759 ggttgacaatatataaaaacGCAATACaaaaaaaaagtaaagaaaaa -713 [-736.0] erythrocyte membrane-associated antigen, putative PFD1225w - -200 tatgtgtatatatgtatatcGCAATTCtattatagtagcaatattta -246 [-223.0] RIF pseudogene PFE0015c - -1 ttttattGCAATACttatatttttttatgattaa -34 [-24.0] RIF pseudogene PFE0920c + -883 catttattttatgatttaaaGCAATTCctaatatcttctaataatat -837 [-860.0] cyclin2 related protein, putative PFE1630w + -308 cgtaaggctatatttcattaGCAATACaaattcaaaaatataaatat -262 [-285.0] rifin PFI0030c - -445 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -491 [-468.0] rifin PFI0050c - -415 caataatagttgttatgggtGTAAACCacatattaatcataataggt -461 [-438.0] rifin PFI0065w + -989 taagtatattattacaactaGTAATCCtacaaatattatatcaagaa -943 [-966.0] rifin PFI0070w - -413 tgtaaattatttacaaatgtGCAAAACcatagttttggaaattttgt -459 [-436.0] rifin PFI0075w + -502 catgcatgttcttcccaattGTAAACCatatgtgatatacacgttca -456 [-479.0] rifin PFI0295c + -516 tctgtgataatatgtgtacgGCAATACataataatgtacataattat -470 [-493.0] hypothetical protein PFL0650c + -875 tatatatttgatttattctaGTAAACCtatttttaaaatttaacaaa -829 [-852.0] hypothetical protein PFL1740w + -351 aaataagatgataaaacaaaGCAAAACtatataaatatttatatata -305 [-328.0] hypothetical protein PFL2610w - -375 taacaatagctgttatgggtGTAAACCatatatatatcataatagtt -421 [-398.0] stevor PFL2615w - -439 tgtaaattatttacaaatgtGCAAAACcaacgttttggaaattgtgt -485 [-462.0] rifin