Size | 8 |
---|---|
Pattern | AATGGACA |
Pattern_RC | TGTCCATT |
LogP | -8.52775088353479 |
Similarity | 0.604578810349661 |
Hits in Cluster | 19 |
Hits in Genome | 356 |
PSSM | ![]() AATGGACA Repeat=4, 21.05% |
Instances | AATGGACA AATAGACA ACTGGACA AATGGAGA TATGGACA AATCGACA AATGGACC |
In Cluster Annotation | -2.174, GO:0000104|succinate dehydrogenase activity -2.174, GO:0009055|electron carrier activity -1.576, GO:0016627|oxidoreductase activity, acting on the CH-CH group of donors -1.403, GO:0020007|apical complex -1.403, GO:0045177|apical part of cell |
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Species | LogP | InCluster | InGenome | InClusterSite | InGenomeSite | Similarity |
---|---|---|---|---|---|---|
Py | -2.56 | 16 | 900 | 24 | 1436 | 0.55 |
Pb | -1.21 | 10 | 728 | 16 | 1429 | 0.49 |
Pc | -3.41 | 5 | 68 | 6 | 78 | 0.65 |
Code: Y=CT W=AT S=CG M=AC K=GT R=AG H=ACT B=CGT V=ACG D=AGT N=ACGT Consensus WNTANNANANWWWWWTWWAAAATGGACAHAWNTAWAWATNWNANNANW MAL13P1.125 + -570 tgtacaaaacaatgttgtaaAATGGACAtaaaaaaaaaaaaaaaaata -523 [-546.5] hypothetical protein MAL13P1.212 + -117 tccaagaagataaaaaaaagAATGGACAactctattttgtaaacaaat -70 [-93.5] hypothetical protein PF08_0005 - -386 aatataacaatattgatgcaACTGGACAtatatatatatatatatata -433 [-409.5] hypothetical protein PF08_0088 + -483 tttttctaagttgaatattaAATAGACAaaaatagttgtttgatttga -436 [-459.5] hypothetical protein PF11_0328 + -379 gcctcgtaaatttatttttaAATGGACCcttgattatatatgtctaca -332 [-355.5] hypothetical protein PF11_0486 + -893 aaaaaaaaggaaaaaaaaaaAATAGACAataataaaaatctgcatgtg -846 [-869.5] MAEBL, putative PF14_0073 + -225 tattgtcttttacatatattAATAGACAtatgttattttttctaaaat -178 [-201.5] hypothetical protein PF14_0074 - -508 atttttaaaactgattcaaaAATGGAGAcaagaaattattatataagc -555 [-531.5] hypothetical protein PF14_0427 - -497 aatataattttttttttttgTATGGACAcatttttttatgtcaaaaat -544 [-520.5] hypothetical protein PF14_0447 - -190 aatagaacataaatatatatAATGGACAaacttaaaaataacaacgaa -237 [-213.5] hypothetical protein PF14_0729 + -896 ataaaattttatttatataaACTGGACAcaagataaaaaaaaaagaaa -849 [-872.5] hypothetical protein PFA0380w - -457 ggccattgtatatttgttggAATGGAGAacaaggcaacttagataaaa -504 [-480.5] serine/threonine protein kinase, putative PFD0430c - -509 attaatacaaaaaaataaaaAATAGACAaaaatataattatatgtgca -556 [-532.5] hypothetical protein PFE0360c - -900 aatacaagatgttatttaaaAATGGAGAtaagcatactcttacaatga -947 [-923.5] hypothetical protein PFE0565w - -523 gaaaaaataattaatatatcAATCGACAattatttgaaagtcacattt -570 [-546.5] hypothetical protein PFI0945w + -666 aatttttaagtcttgtaaaaAATGGAGAttgtacaacatgaactgttc -619 [-642.5] hypothetical protein PFL0065w + -788 atatacatatatatatttatTATGGACAtaatttatatttgtatgaaa -741 [-764.5] hypothetical protein PFL0370w - -409 tgttaaataaatttttattcAATAGACAtaacaaaacaaatatataat -456 [-432.5] hypothetical protein PFL0630w + -656 tatacataaatttattacaaTATGGACAcatttaaaatatatattttt -609 [-632.5] iron-sulfur subunit of succinate dehydrogenase