Size7
PatternACGGCTG
Pattern_RCCAGCCGT
LogP-6.79340178248052
Similarity0.414557811604494
Hits in Cluster36
Hits in Genome1835
PSSM
ACGGCTG
Repeat=10, 27.78%
InstancesACGGCTG aaggctg ATGGCTG acagctg acgtctg acggttg acggctc acgactg ACGCCTG actgctg acggcta acggatg agggctg cagccga acgggtg AAAGCTG atagctg aagccgt AAGTCTG ATGTCTG ACATCTG AAGGTTG ATGGTTG ACAGTTG aaggctc atggctc ACAGCTC ACGTTTG ACGTCTC aagactg atgactg ACAACTG accgctg acggcag acggttc aagcctg ATGCCTG ACACCTG AATGCTG AAGGCTA attgctg ATGGCTA acagcta AAGGATG ATGGATG ACAGATG acgattg ACGACTC ACTTCTG ACGTCTA ACGTATG ACGCTTG ACGCCTC ACTGTTG ACGGTTA ACTGCTC acggatc AGAGCTG cagccta actactg CAGCCAA cagctga ACGACTA aggtctg ACGAATG acggcgg cagacga AGGGTTG actcctg acgccta AGGGCTC ACGCATG ACTGCTA
In Cluster Annotation-1.908, GO:0000104|succinate dehydrogenase activity
-1.908, GO:0004108|citrate (Si)-synthase activity
-1.908, GO:0009055|electron carrier activity
-1.908, GO:0016833|oxo-acid-lyase activity
-1.908, GO:0046912|transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

SpeciesLogPInClusterInGenomeInClusterSiteInGenomeSiteSimilarity
Py-0.888493116500.46
Pb-0.331591640.54
Pc-1.1439231020.53

Pf in ClusterPf in GenomePy in ClusterPy in GenomePb in ClusterPb in GenomePc in ClusterPc in Genome

Code: Y=CT W=AT S=CG M=AC K=GT R=AG H=ACT B=CGT V=ACG D=AGT N=ACGT
Consensus              NWNWWWWNANWWWWWNWANNACGNHTGNAWNNNNWANWWAWWNWWWN
MAL13P1.125       -    -35 ataaataaataaataaataaACAACTGaattttaaataaacttaatt    -81    [-58.0]  hypothetical protein
MAL13P1.212       +   -759 caaaactgcctttgcaatatACAACTGattgttcaatatatttttac   -713   [-736.0]  hypothetical protein
MAL8P1.6          -   -524 ttttttttatttttggagaaAAGGCTAatttaaaaattttctttaaa   -570   [-547.0]  hypothetical protein
PF08_0005         -   -770 aacacaagaaattgttgtatACTTCTGgaagaagaagaaaaaaaaaa   -816   [-793.0]  hypothetical protein
PF08_0088         +   -536 atgtttgaagttaatatataAATGCTGcatgcaggagaaaaaaaaaa   -490   [-513.0]  hypothetical protein
PF10_0218         +   -405 tattgtttatgttgcatataACGTTTGaacattatccgaaatatata   -359   [-382.0]  citrate synthase, mitochondrial precursor, putative
PF10_0231         +   -264 ataaaagtataatatttaaaAAGTCTGcatgcaatataggtactctc   -218   [-241.0]  hypothetical protein
PF11_0239         -    -78 atatgcgtacacatatacgcACGTTTGtattttaaggcaattcaatt   -124   [-101.0]  hypothetical protein
PF11_0328         +   -651 agaaaaaaaatcttcctataACTGTTGcattaaaaatttattattat   -605   [-628.0]  hypothetical protein
PF11_0480         -   -166 aaaattatgcaccaacaaaaAAGGTTGtcaactaaaatatgtaacac   -212   [-189.0]  hypothetical protein
PF11_0486         -   -171 gaaaaataagtagcaatatcACGACTAcgtatgcaattagaaaaaac   -217   [-194.0]  MAEBL, putative
PF13_0201         -   -848 agagaatcagatttattcaaACGCATGctgttttaaaataaaaaaaa   -894   [-871.0]  sporozoite surface protein 2
PF13_0201         -    -49 aaaagataatattttcttgtACGCATGcacatacaaattatataatc    -95    [-72.0]  sporozoite surface protein 2
PF14_0073         +   -382 caatatatatatattatacaACGGTTAtatattttttagaatggatc   -336   [-359.0]  hypothetical protein
PF14_0074         -   -369 tttttaacaacattatggttATGGCTAgtagaaagccaaaaagttca   -415   [-392.0]  hypothetical protein
PF14_0427         -    -47 aaaaaaaaaattgaaaaataAGGGTTGgacaaaaaaaaaaaaaaatt    -93    [-70.0]  hypothetical protein
PF14_0447         -   -371 cacttattaaaaccacgaatAAGGCTAaaacaaacccccaaaaaaaa   -417   [-394.0]  hypothetical protein
PF14_0729         +   -120 atatttatttatttatttatACGTATGtgcggtgaacataatatacc    -74    [-97.0]  hypothetical protein
PFA0200w          -   -441 atcttttatatttaaggaaaAGGGCTCaactactaatccgacaacat   -487   [-464.0]  hypothetical protein
PFA0205w          -   -339 aaaaatgtgcggttattcatACGAATGatttttatatgaaaaaaagt   -385   [-362.0]  hypothetical protein
PFA0380w          +   -177 atatggatatatatgattatACGCTTGtaatgcttacatatacatat   -131   [-154.0]  serine/threonine protein kinase, putative
PFB0325c          -   -958 ttttttttttttttttggaaACGCCTCattttcttttaaatta      -1000   [-977.0]  cysteine protease, putative
PFC0210c          +   -924 gtgaatttataaaaaaaagcACGAATGaaactatttaattttctttt   -878   [-901.0]  circumsporozoite (CS) protein
PFD0215c          +   -279 catatgacaagaaaaaaggaACTGTTGcaatgtattattagaaaaag   -233   [-256.0]  P. berghei pbs36-related protein
PFD0235c          +   -359 accctttgatcatttttatgATGGTTGttggattcattttaaaaatc   -313   [-336.0]  hypothetical protein
PFD0425w          -   -883 ataaatataacaatcggatgAAGGATGattattaagaatcaagctca   -929   [-906.0]  hypothetical protein
PFD0430c          +  -1000   tcgtaagataaaattctcACTGCTAtaaaattaatgtctctttat   -956   [-977.0]  hypothetical protein
PFE0360c          +   -673 tttattataataaaaatattTTGGCTGtttttttttttttttttttt   -627   [-650.0]  hypothetical protein
PFE0360c          -   -555 tttatatacctaaaaatattTTGGCTGtttttttttttttttttttt   -601   [-578.0]  hypothetical protein
PFE0565w          -    -44 taacaaagaattataaataaACGGTTAaaagagggaaataatttctg    -90    [-67.0]  hypothetical protein
PFE0950c          -   -446 aatgagagttataatttagcATGTCTGcatatatacaaatgtaaaat   -492   [-469.0]  hypothetical protein
PFI0945w          +   -424 attaaaaaaaaaaaaaaaatAAGGTTGcaaaagaaaatttcgcttat   -378   [-401.0]  hypothetical protein
PFL0085c          -   -419 aaaaaaaatttaattttacaaCATCTGTtttgtcctttcataaaaaa   -465   [-442.0]  hypothetical protein
PFL0370w          +   -493 ttatataacatgcatgttgtAGAGCTGtatataaaatattatatatt   -447   [-470.0]  hypothetical protein
PFL0630w          -   -120 tacatatatataaacatataACGAATGaaaagattatgcaaatgtat   -166   [-143.0]  iron-sulfur subunit of succinate dehydrogenase
PFL0800c          -   -478 ttaagacaattaataaaagaTTGGCTGagtgttcataaacatgttct   -524   [-501.0]  hypothetical protein
PFL1770c          +   -561 ggggaaaaaaaaataactagcCATCTGTaaaagctataaaacatgta   -515   [-538.0]  hypothetical protein
chr1.rRNA-1-28s   +  -1000  atatagcacaatcttaacgATGGATGtcttggctcttgtagcgatg   -955   [-977.0]